Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015885587.1_cds_XP_016439613.1_35153
CDS Infomation

[gene=LOC107765472] [db_xref=GeneID:107765472] [protein=4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-like] [protein_id=XP_016439613.1] [location=join(43833..44094,45021..45217,45967..46146,46231..46362,46455..46529,46615..46720,46808..46902,48022..48207,48287..48373,49238..49303)] [gbkey=CDS]
Sequence

ATGGCTATTCCTCTCCAGTTCTCTAGTATCTCCATTCGTACAGAACTCTCCTTGCCGGAG
ACTAGAACTTTCCGATTGCCGAAGTTCTCCGTCGTTAGATGCTCCGCCGGCGAAGCTGCT
CCTTCCTCCTCGTCTACTGCGGATTCAGAGTTCGATGCTAAGGTTTTTCGGAAGAACTTG
ACCAGAAGTGCTAATTACAATCGTAAAGGATTTGGACATAAAGAAGCTACTCTTGAGCTA
TTGAATCAGGAGTATCAATCTAGTGATATCATAAAGAAATTGAAGGAGAATGGATATGAG
TACACCTGGGGAAATGTTACCGTAAAACTTGCAGAGGCCTATGGTTTCTGTTGGGGGGTT
GAGCGTGCAGTTCAGATTGCTTATGAAGCGAGGAAACAGTTTCCAACAGAGAGGCTTTGG
ATAACCAATGAAATTATTCACAACCCCACTGTGAATAAGAGACTAGAGGAGATGGAAGTT
AAAAACATCCCTATTGAGGAAGGCAAGAAAATTTTTGATGTTGTTGACAAGGATGATGTT
GTGGTTTTGCCTGCTTTTGGGGCCGCTGTTGATGAAATGCTTGTTTTGAGTGATAAAAAC
GTACAAATCGTTGATACAACCTGCCCCTGGGTAACAAAGGTCTGGAACACCGTTGAAAAG
CACAAGAAGGGAGACTATACCTCCATTATCCATGGTAAATATTCTCATGAGGAGACTGTA
GCGACTGCATCCTTTGCTGGGAAATACATCATTGTGAAGAACATGGCAGAGGCAACTTAT
GTCTGTGATTATATTCTTGGAGGTAAACTTGACGGTTCTAGCTCAACCAAAGAGGCATTT
ATGCAGAAATTCAAAAACGCAGTTTCTAAAGGGTTCGATCCGGATGTTGATCTTGTAAAA
ACTGGTATTGCAAACCAAACTACAATGTTGAAGGGAGAAACAGAAGAAATTGGGAAGTTG
GTTGAGAGGACAATGATGCAAAGATATGGGGTGGAAAATATTAACAACCACTTCATAAGT
TTCAACACTATATGTGATGCAACTCAAGAGCGGCAAGATGCAATGTATAAGCTGGTTGAT
CAAAAGCTTGATCTTATGTTAGTGGTTGGCGGTTGGAACTCAAGCAACACTTCACATCTT
CAGGAGATTGCGGAGGAGCGTGGAATTCCCTCATACTGGATTGACAGTGAGCAGAGAATA
GGTCCTGGAAACAGAATAAGTTACAAGTTGCTGCATGGTGAGTTGGTCGAGAAAGAGAAC
TTCTTACCCGAGGGTCCTATTACAGTTGGGGTGACATCTGGTGCATCCACCCCCGATAAG
GTTGTTGAAGATGTCCTTATAAAGGTGTTTGATATCAAGCGCGAACAAGCCTTACAATTG
GCGTAA

Peptide Sequence

PEP ID

XP_016439613.1
PEP Infomation

PREDICTED: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-like [Nicotiana tabacum]
Sequence

MAIPLQFSSISIRTELSLPETRTFRLPKFSVVRCSAGEAAPSSSSTADSEFDAKVFRKNL
TRSANYNRKGFGHKEATLELLNQEYQSSDIIKKLKENGYEYTWGNVTVKLAEAYGFCWGV
ERAVQIAYEARKQFPTERLWITNEIIHNPTVNKRLEEMEVKNIPIEEGKKIFDVVDKDDV
VVLPAFGAAVDEMLVLSDKNVQIVDTTCPWVTKVWNTVEKHKKGDYTSIIHGKYSHEETV
ATASFAGKYIIVKNMAEATYVCDYILGGKLDGSSSTKEAFMQKFKNAVSKGFDPDVDLVK
TGIANQTTMLKGETEEIGKLVERTMMQRYGVENINNHFISFNTICDATQERQDAMYKLVD
QKLDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNRISYKLLHGELVEKEN
FLPEGPITVGVTSGASTPDKVVEDVLIKVFDIKREQALQLA

Transcript Sequence

Gene sequence data has not been registered.